biojava.github.io/docs/api7.1.4/src-html/demo/DemoCommandLineStartup.html at refs/heads/master · biojava/biojava.github.io · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
<!DOCTYPE HTML>
<html lang>
<head>
<!-- Generated by javadoc (21) -->
<title>Source code</title>
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="source: package: demo, class: DemoCommandLineStartup">
<meta name="generator" content="javadoc/SourceToHTMLConverter">
<link rel="stylesheet" type="text/css" href="../../stylesheet.css" title="Style">
</head>
<body class="source-page">
<main role="main">
<div class="source-container">
<pre><span class="source-line-no">001</span><span id="line-1">/*</span>
<span class="source-line-no">002</span><span id="line-2"> *                    BioJava development code</span>
<span class="source-line-no">003</span><span id="line-3"> *</span>
<span class="source-line-no">004</span><span id="line-4"> * This code may be freely distributed and modified under the</span>
<span class="source-line-no">005</span><span id="line-5"> * terms of the GNU Lesser General Public Licence.  This should</span>
<span class="source-line-no">006</span><span id="line-6"> * be distributed with the code.  If you do not have a copy,</span>
<span class="source-line-no">007</span><span id="line-7"> * see:</span>
<span class="source-line-no">008</span><span id="line-8"> *</span>
<span class="source-line-no">009</span><span id="line-9"> *      http://www.gnu.org/copyleft/lesser.html</span>
<span class="source-line-no">010</span><span id="line-10"> *</span>
<span class="source-line-no">011</span><span id="line-11"> * Copyright for this code is held jointly by the individual</span>
<span class="source-line-no">012</span><span id="line-12"> * authors.  These should be listed in @author doc comments.</span>
<span class="source-line-no">013</span><span id="line-13"> *</span>
<span class="source-line-no">014</span><span id="line-14"> * For more information on the BioJava project and its aims,</span>
<span class="source-line-no">015</span><span id="line-15"> * or to join the biojava-l mailing list, visit the home page</span>
<span class="source-line-no">016</span><span id="line-16"> * at:</span>
<span class="source-line-no">017</span><span id="line-17"> *</span>
<span class="source-line-no">018</span><span id="line-18"> *      http://www.biojava.org/</span>
<span class="source-line-no">019</span><span id="line-19"> *</span>
<span class="source-line-no">020</span><span id="line-20"> * Created on Feb 3, 2010</span>
<span class="source-line-no">021</span><span id="line-21"> * Author: Andreas Prlic</span>
<span class="source-line-no">022</span><span id="line-22"> *</span>
<span class="source-line-no">023</span><span id="line-23"> */</span>
<span class="source-line-no">024</span><span id="line-24"></span>
<span class="source-line-no">025</span><span id="line-25">package demo;</span>
<span class="source-line-no">026</span><span id="line-26"></span>
<span class="source-line-no">027</span><span id="line-27">import org.biojava.nbio.structure.align.ce.CeMain;</span>
<span class="source-line-no">028</span><span id="line-28"></span>
<span class="source-line-no">029</span><span id="line-29">public class DemoCommandLineStartup</span>
<span class="source-line-no">030</span><span id="line-30">{</span>
<span class="source-line-no">031</span><span id="line-31"></span>
<span class="source-line-no">032</span><span id="line-32">        public static void main(String[] arg) throws Exception {</span>
<span class="source-line-no">033</span><span id="line-33"></span>
<span class="source-line-no">034</span><span id="line-34">                // demo how to use with command line parameters</span>
<span class="source-line-no">035</span><span id="line-35">                String commandLine = "-file1 /tmp/cd/pdb1cdg.ent.gz -file2 file:///tmp/ti/pdb1tim.ent.gz -printCE";</span>
<span class="source-line-no">036</span><span id="line-36">                String[] args = commandLine.split(" ");</span>
<span class="source-line-no">037</span><span id="line-37"></span>
<span class="source-line-no">038</span><span id="line-38">                CeMain.main(args);</span>
<span class="source-line-no">039</span><span id="line-39"></span>
<span class="source-line-no">040</span><span id="line-40">        }</span>
<span class="source-line-no">041</span><span id="line-41">}</span>


</pre>
</div>
</main>
</body>
</html>